Downloads

GEM genome indices

Homo sapiens

• GRCh37/hg19 (February 2009)

Mus musculus

• NCBI37/mm9 (July 2007)

Drosophila melanogaster

• FlyBase genome v5.46 (July 2012)

GEM transcriptome indices

H. sapiens

• Gencode v19 (July 2013, hg19) long transcripts.
• Gencode v10 (July 2011, hg19) long transcripts.

Note

The long transcript group excludes ribosomal, micro, transfer, small cytoplasmic, small nucleolar and small nuclear RNAs.

M. musculus

• Ensembl v65 (December 2011, mm9) long transcripts.

D. melanogaster

• FlyBase annotation v5.46 (July 2012, v5.46)

Similarity between gene pair matrices

H. sapiens

• Gencode v19 similarity matrix for long transcripts (GRCh37/hg19).
• Gencode v10 similarity matrix for long transcripts (GRCh37/hg19).

M. musculus

• Ensembl v65 similarity matrix for long transcripts (GRCh37/mm9).